Sunday, March 4, 2012

Study Notes

UNIT 1 – CELL BIOLOGY

Cell Compounds

Describe how the polarity of the water molecule results in hydrogen bonding

Water contains a polar covalent bond (uneven sharing of electrons) so electrons are held closer to oxygen which makes it electronegative and hydrogen atoms become slightly electropositive

Describe the role of water as a solvent, temperature regulator, and lubricant

· Only substances dissolved in water can enter the cells

· Regulates temperature in living organisms – with high specific heat capacity

· Acts as a lubricant in joins – high surface tension

Distinguish among acids, bases and buffers and indicate the importance of pH to biological systems

Acids – 0-7pH is acidic, releases H+ ions Bases – 7-14 is basic, releases OH- ions (or take up H+ ions) Buffer – maintains pH by accepting or releasing H+ ions

If the pH changes, enzymes (proteins) denature (proteins’ shape is critical to its function).

Biological Molecules

Demonstrate a knowledge of synthesis and hydrolysis as applied to organic polymers

Hydrolysis – Breaking down of water, polymers are broken down into monomers.

Dehydration Synthesis – Monomers are linked to create polymers and water is produced. One molecule loses an H+ and the other loses an OH-

Distinguish among carbohydrates, proteins, lipids and nucleic acids with respect to chemical structure

Carbohydrates – Empirical Formula is 1:2:1, (CH2O)

Proteins – made up of amino acids – each amino acid has an amino group NH2 acid group COOH and an “R” group (variable group).

Lipids –

Fatty Acids – Long chains of carbons with hydrogen atoms attached, ending in an acid group (-COOH)

Neutral Fats (Triglycerides) – glycerol and 3 fatty acids

Phospholipids – glycerol, 2 fatty acids and phosphate group. Have a head (hydrophilic) and a tail (hydrophobic)

Steroids – multi-ringed structure derived from lipids.

Recognize the empirical formula of a carbohydrate

1:2:1

Differentiate among monosaccharides, disaccharides and polysaccharides

M – Contain one (sugar) monosaccharide unit – simple sugar

D – Contain 2 (sugar) monosaccharide units – simple sugar

P – Contains more than 2 (sugar) monosaccharide units – complex carbohydrate

Differentiate among starch, cellulose and glycogen

Starch – short term energy for humans – fairly straight chains of glucose

Cellulose (fiber) – energy for plants – cannot be broken down by humans

Glycogen – longer term energy for humans – highly branched chains of glucose

List the main functions of carbohydrates

Provides energy and regulation of blood glucose

Breakdown of fatty acids

Dietary fiber

Compare and contrast saturated and unsaturated fats in terms of molecular structure

Saturated fats - don’t have double bonds, solid at room temp. (Butter, lard)

Unsaturated fats – have double bonds between carbons, liquid at room temp. (Vegetable oil)

Describe the location and explain the importance of the following in the human body: neutral fats, steroids and phospholipids

Neutral fats – stores nutrients and protein in body (thigh and torso area)

Steroids – chemical messengers and form important hormones (found in every cell of body)

Phospholipids – forms cell membrane (located in all membranes of the cell)

Draw a generalized amino acid and identify the amino, acid and R groups

Description: C:\Users\Deep Gill\Desktop\aminoacidstruc.jpg

Differentiate among the primary, secondary, tertiary and quaternary structure of proteins

Primary – sequence of amino acids (AA) joined in a line

Secondary – spiral of alpha helix shape caused by H-bonds forming between AA’s

Tertiary – Ionic, covalent and H-bonding between R-groups causes the alpha helix to fold into irregular shape.

Quaternary – specific arrangement of 2 or more polypeptide chains. (Hemoglobin – carries O2 throughout the blood)

List the major functions of proteins

Structure – elastic and collagen in cartilage and bone

Hormones – chemical messengers in body

Enzymes – biochemical catalysts that speed up reactions

Transport – protein channels

Immunity – recognize and fight invaders

Relate the general structure of the ATP molecule to its role as “energy currency”

CTM

Chemical work – reactions within cell

Transport work – ion transport across cell membrane

Mechanical work – muscle contraction

Composed of 5-carbon sugar ribose and a base called adenine and three phosphate groups

· Two phosphate bonds are unstable and easily broken. Special enzymes remove a phosphate molecule from ATP when energy is needed because when the breakdown occurs, energy is released. Energy can be used for CTM.

Cell Structure

Cell membrane provides protection, import & export endo/exocytosis

Nucleolus where RNA is synthesized produces ribosomes

Nucleus controls all cell activities, contains RNA, DNA and proteins

Ribosome site of protein production, reads RNA code, translates into amino acid sequence - protein, made of rRNA and protein

Vesicle carries dissolved foods and wastes from one part of cell to others, membrane bound sac, formed from pinching off of membrane of ER, Golgi body, and cell membrane

Rough endoplasmic reticulum processes protein, network of tubules, contains ribosomes
Golgi apparatus modifies packages and secretes proteins, stacked flat sacs

Cytoskeleton provided internal skeleton/framework for a cell, movement of vesicles and organelles, protein filaments and microtubules

Smooth ER the site of fat synthesis, package proteins for transport within cell network of tubules – extension of nuclear membranes, lack ribosomes

Mitochondria cells powerhouse, provides ATP energy, matrix and cristae

Vacuole stores dissolved foods and wastes, membrane mound sac, larger than vesicles

Cytoplasm material that surrounds organelles

Lysosome, garbage disposal, breakdown bacteria entering cell, membrane bound sacs, package of digestive enzymes

Centrioles helps chromosome separate during cell division

Nuclear envelope – protection of nuclear contents, allows communication with cell via RNA, double membrane, contains nuclear pores

Chromosomes – genetic blueprint in bases, cell division, RNA transcription, double stranded DNA molecules, found in nucleus

Identify the functional interrelationships of cell structures

· Chromosomes contain the DNA code for proteins.

· Ribosomes or rough endoplasmic reticulum are sites of protein production.

· Endoplasmic reticulum temporarily stores proteins coded by the DNA of the chromosome.

· Vesicles transport proteins to Golgi bodies.

· Golgi bodies receive proteins from vesicles and repackage these proteins into new vesicles.

· The proteins in these new vesicles are either exported (by fusing with the cell membrane) or used within the cell as a lysosome.

Identify the cell structures in diagrams and electron micrographs





1 - Nucleolus
2 - Nucleus
3 - Ribosome
4 - Vesicle
5 - Rough endoplasmic reticulum
6 - Golgi apparatus
7 - Cytoskeleton
8 - Smooth er
9 - Mitochondria
10 - Vacuole
11 - Cytoplasm
12 - Lysosome
13 - Centrioles

Name the four bases in DNA and describe the structure of DNA using the following terms: nucleotide, complementary base pairing, double helix, hydrogen bonding

Four bases: cytosine, guanine, adenine, thymine

DNA is made up of millions of base pairs, containing a variation of four different bases connecting to each other two at a time (C and G) (A and T) through complementary base pairing. The bases are joined to each other by hydrogen bonding and are located in the middle of a double helix made up of phosphate and sugar (deoxyribose). One nucleotide consists of a single sugar, phosphate and base.

Describe DNA replication with reference to three basic steps:

1) The two strands of the parent DNA unwind (helicase) and unzip (weak hydrogen bonds broken between the bases).

2) New complementary nucleotides, always present in the nucleus, move into the appropriate place according to complementary base pairing.

3) The enzyme DNA polymerase joins the complementary nucleotides so that the new DNA molecule is again double stranded.

Define recombinant DNA

DNA that has been genetically engineered by splicing genes or DNA from two different sources or species together to form new genetic material.

Describe three uses for recombinant DNA

· treating diseases (injecting virus that has the DNA to reproduce bone cells into bones to treat bone marrow disease)

· reproduce artificial organs (as in donor organs that are made in animals such as pigs with human DNA, it's still experimental)

· mass produce medical treatments (as in bacteria produced insulin when the insulin gene is spliced into the bacteria)

Compare and contrast the general structure composition of DNA and RNA

DNA

RNA

Sugar

Deoxyribose

Ribose

Bases

Adenine Thymine Cytosine Guanine

Adenine Uracil Cytosine Guanine

Strands

Double stranded with base pairing

Single stranded

Helix

Yes

No


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